mikelove/rnaseqDTU: RNA-seq workflow for differential transcript usage following Salmon quantification

RNA-seq workflow for differential transcript usage (DTU) following Salmon quantification. This workflow uses Bioconductor packages tximport, DRIMSeq, and DEXSeq to perform a DTU analysis on simulated data. It also shows how to use stageR to perform two-stage testing of DTU, a statistical framework to screen at the gene level and then confirm which transcripts within the significant genes show evidence of DTU.

Getting started

Package details

Bioconductor views GeneExpressionWorkflow ImmunoOncologyWorkflow Workflow
Maintainer
LicenseArtistic-2.0
Version1.3.1
URL https://github.com/mikelove/rnaseqDTU/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("mikelove/rnaseqDTU")
mikelove/rnaseqDTU documentation built on Dec. 3, 2018, 11:17 p.m.