Man pages for mikelove/rnaseqDTU
RNA-seq workflow for differential transcript usage following Salmon quantification
| cts | Estimated Salmon counts (6 vs 6) |
| dge.genes | Genes with differential gene expression |
| disps | Transcript-level dispersion parameter |
| dte.genes | Genes with differential transcript expression |
| dtu.genes | Genes with differential transcript usage |
| dxr | DEXSeq transcript-level results |
| dxr.g | DEXSeq gene-level results |
| fold_changes | Simulation fold changes |
| frag_GC_bias | Fragment GC bias |
| iso.dge | Isoforms in the genes with DGE |
| iso.dte | Isoforms with DTE |
| iso.dte.only | Isoforms with DTE and not DTU |
| iso.dtu | Isoforms with DTU |
| res | DRIMSeq gene-level results |
| res.txp | DRIMSeq transcript-level results |
| sim_counts | Simulated counts for group 1 |
| sim.counts.mat | Simulated counts |
| tpms | Simulated abundances |
| txdf | Transcript-to-gene data.frame |
| txi.g | Gene-level tximport object |
