retrieveDb: Retrieve the TxDb or EnsDb associated with a...
In mikelove/tximeta: Transcript Quantification Import with Automatic Metadata
retrieveDb R Documentation
Retrieve the TxDb or EnsDb associated with a SummarizedExperiment
Description
SummarizedExperiment objects returned by tximeta have
associated TxDb or EnsDb databases which are cached locally and used
to perform various metadata related tasks. This helper function
retrieves the database itself for the user to perform any additional
operations.
Usage
retrieveDb(se)
Arguments
se
the SummarizedExperiment
Value
a database object
Examples
example(tximeta)
edb <- retrieveDb(se)
mikelove/tximeta documentation built on Feb. 26, 2024, 4:32 a.m.
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| retrieveDb | R Documentation |
Retrieve the TxDb or EnsDb associated with a SummarizedExperiment
Description
SummarizedExperiment objects returned by tximeta have
associated TxDb or EnsDb databases which are cached locally and used
to perform various metadata related tasks. This helper function
retrieves the database itself for the user to perform any additional
operations.
Usage
retrieveDb(se)
Arguments
se |
the SummarizedExperiment |
Value
a database object
Examples
example(tximeta)
edb <- retrieveDb(se)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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