API for mikemc/metacal
Bias estimation and calibration for metagenomics experiments
| Global functions | |
|---|---|
| anorm | Man page |
| as_matrix | Man page Source code |
| bootrep_center | Man page |
| build_matrix | Man page Source code |
| calibrate | Man page Source code |
| calibrate.matrix | Man page Source code |
| calibrate.otu_table | Man page Source code |
| calibrate.phyloseq | Man page Source code |
| center | Man page Source code |
| center_elts | Man page |
| close_elts | Man page |
| clr | Man page Source code |
| compute_ratios | Man page Source code |
| cooccurrence | Man page |
| cooccurrence_components | Man page Source code |
| cooccurrence_matrix | Man page Source code |
| cooccurrence_network | Man page Source code |
| corner | Man page |
| estimate_bias | Man page Source code |
| estimate_bias.matrix | Man page Source code |
| estimate_bias.otu_table | Man page Source code |
| estimate_bias.phyloseq | Man page Source code |
| fitted.mc_bias_fit | Source code |
| gm | Man page Source code |
| gm_abs | Man page Source code |
| gm_mean | Man page Source code |
| gm_range | Man page Source code |
| gm_sd | Man page Source code |
| import_phyloseq | Man page |
| log_center_gm | Source code |
| log_center_proj | Man page Source code |
| log_center_rss | Man page Source code |
| logit | Man page |
| mean_efficiency | Man page Source code |
| mean_efficiency.matrix | Man page Source code |
| mean_efficiency.mc_bias_fit | Man page |
| mean_efficiency.otu_table | Man page |
| mean_efficiency.phyloseq | Man page |
| metacal | Man page |
| metacal-package | Man page |
| mutate_by | Man page Source code |
| odds | Man page |
| pairwise_ratios | Man page Source code |
| pairwise_ratios.default | Man page Source code |
| pairwise_ratios.matrix | Man page Source code |
| pairwise_ratios.otu_table | Man page Source code |
| pairwise_ratios.phyloseq | Man page Source code |
| perturb | Man page Source code |
| perturb.matrix | Man page Source code |
| perturb.mc_bias_fit | Man page Source code |
| perturb.otu_table | Man page Source code |
| perturb.phyloseq | Man page Source code |
| proj_mat | Man page Source code |
| residuals.mc_bias_fit | Source code |
| xydist | Man page Source code |
