bootrep_center: Generate bootstrap replicates of the sample center

In mikemc/metacal: Bias estimation and calibration for metagenomics experiments

Description

Generate bootstrap replicates of the sample center

Usage

bootrep_center(
  .data,
  R = 4000,
  N = nrow(.data),
  method = "proj",
  dist = "dirichlet",
  in_scale = "linear",
  out_scale = "linear",
  denom = NULL,
  enframe = FALSE
)

Arguments

.data	All-numeric data frame or matrix with taxa as columns.
R	Number of bootstrap replicates.
N	Number of trials for multinomial resampling.
method	Method for computing the center: "proj", "gm", or "rss".
dist	Distribution for drawing the bootstrap weights: "dirichlet" or "multinomial".
in_scale	"linear" (default) or "log".
out_scale	"linear" (default) or "log".
denom	Taxa to use in the denominator; if NULL, use all taxa.
enframe	Whether to "enframe" the bootstrap estimates in a tibble.

mikemc/metacal documentation built on Feb. 20, 2022, 1:46 a.m.