Files in mikemc/metacal
Bias estimation and calibration for metagenomics experiments
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/bias-helpers.R
R/calibrate.R
R/compositional-mean.R
R/estimate.R
R/math.R
R/mean_efficiency.R
R/metacal-package.R
R/metacal.R
R/ratios.R
R/utilities.R
R/utils-pipe.R
README.md
_pkgdown.yml
data-raw/brooks2015.R
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/index.html
docs/articles/tutorial.html
docs/articles/tutorial_files/figure-html/unnamed-chunk-11-1.png
docs/articles/tutorial_files/figure-html/unnamed-chunk-17-1.png
docs/articles/tutorial_files/figure-html/unnamed-chunk-20-1.png
docs/articles/tutorial_files/figure-html/unnamed-chunk-23-1.png
docs/articles/tutorial_files/figure-html/unnamed-chunk-24-1.png
docs/articles/tutorial_files/figure-html/unnamed-chunk-8-1.png
docs/articles/tutorial_files/header-attrs-2.9/header-attrs.js
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/anorm.html
docs/reference/as_matrix.html
docs/reference/bootrep_center.html
docs/reference/build_matrix.html
docs/reference/calibrate.html
docs/reference/center.html
docs/reference/center_elts.html
docs/reference/close_elts.html
docs/reference/clr.html
docs/reference/compute_ratios.html
docs/reference/cooccurrence.html
docs/reference/corner.html
docs/reference/estimate_bias.html
docs/reference/gm.html
docs/reference/gm_abs.html
docs/reference/gm_mean.html
docs/reference/gm_range.html
docs/reference/gm_sd.html
docs/reference/import_phyloseq.html
docs/reference/index.html
docs/reference/log_center_proj.html
docs/reference/log_center_rss.html
docs/reference/logit.html
docs/reference/mutate_by.html
docs/reference/odds.html
docs/reference/pairwise_ratios.html
docs/reference/perturb.html
docs/reference/proj_mat.html
docs/reference/xydist.html
inst/extdata/brooks2015-actual.csv
inst/extdata/brooks2015-observed.csv
inst/extdata/brooks2015-sample-data.csv
man/anorm.Rd
man/as_matrix.Rd
man/bootrep_center.Rd
man/build_matrix.Rd
man/calibrate.Rd
man/center.Rd
man/center_elts.Rd
man/close_elts.Rd
man/clr.Rd
man/compute_ratios.Rd
man/cooccurrence.Rd
man/corner.Rd
man/estimate_bias.Rd
man/gm.Rd
man/gm_abs.Rd
man/gm_mean.Rd
man/gm_range.Rd
man/gm_sd.Rd
man/import_phyloseq.Rd
man/log_center_proj.Rd
man/log_center_rss.Rd
man/logit.Rd
man/mean_efficiency.Rd
man/metacal-package.Rd
man/mutate_by.Rd
man/odds.Rd
man/pairwise_ratios.Rd
man/perturb.Rd
man/proj_mat.Rd
man/xydist.Rd
tests/testthat.R
tests/testthat/test-calibrate.R
tests/testthat/test-center.R
tests/testthat/test-ratios.R
tests/testthat/test-utilities.R
vignettes/tutorial.Rmd
