exp.fit.all.log.lin: exp.fit.all.log.lin

Description Usage Arguments Examples

View source: R/exp.fit.all.log.lin.R

Description

Function takes a list of calcium imaging files by filenames in the current working directory (.mat files) and performs an exponential fit to normalize the deltaF/F signal. This function incorporates a linear to account for gradual rise in signal, which can alter the single exponential. Will output plots showing orignal and fitted values, as well as corrected values. If an object is assigned, this will be a vector of corrected values

Usage

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## S3 method for class 'fit.all.log.lin'
exp(filename, skip.time)

Arguments

filename

filepaths of .mat files which have a "signal" and "time" field.

skip.time

number of seconds to skip at the beginning for the exponential fit. N=10 improves the fit.

Examples

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data <- exp.fit.all.log.lin(files[1], skip.time = 10)

mikeod38/ProvidenciaChemo documentation built on Aug. 24, 2018, 8:34 p.m.