plot_plasticityIndex: plot_plasticityIndex

In mikeod38/ProvidenciaChemo:

Description

This function is used to plot a modulation, ie a relative change in log odds of a chemotaxis response. In principle, this function could be used to plot other relative proportion data. The plot is relative to a common control, and expects output from format_AvoidData().

Usage

plot_plasticityIndex(df, xvar = strain, dot_color = strain,
  palette = main, BayesFit = FALSE, width = 0.5, alpha = 1,
  bar = FALSE, n_pos = -3, ...)

Arguments

xvar	x-axis before facetting. This should be the variable that will divide the nearest data categories. Usually this is "strain" - the food source.
dot_color	factor by which to order the color categories
palette	see eg using plot_color_themes
BayesFit	optional to include a Bayes credile interval based on posterior draws. Must have a "fitted" object which is derived from recenter_fittedValues() function. If using this, the xvar is locked to "data_type" column to align the raw data and fitted values. Additional orienting of the data needs to be done by facetting.
width	width of horizontal elements, median, error bars.
data	dataset used to plot, must be proportion data

Examples

data %>% plot_plasticityIndex()

mikeod38/ProvidenciaChemo documentation built on April 6, 2020, 11:57 p.m.