compute_insertions: Compute insertion size histogram
In milaboratory/mirutil:
Description
Usage
Arguments
Value
Description
Computes the distribution of insert sizes in various
CDR3 regions: 'VD', 'DJ' or 'VJ'. In case metadata is provided, applicable
insert regions/types are deduced from the list of chains present in data
Usage
1
compute_insertions(sample, metadata = NA)
Arguments
sample
clonotype table, imported using 'read_mixcr_dataset' or
'read_mixcr_sample' functions
metadata
metadata, a named list with chain identifiers
stored under the 'chain' entry - a comma-separated list of chains such as
'TRA', 'TRB', etc is expected. If set to NA will assume all chains are present
Value
insert size table with unweighted 'freq.clonotypes' and
weighted 'freq.reads' frequencies, unnormalized 'count.*' values
are also provided
milaboratory/mirutil documentation built on May 20, 2019, 1:24 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Computes the distribution of insert sizes in various CDR3 regions: 'VD', 'DJ' or 'VJ'. In case metadata is provided, applicable insert regions/types are deduced from the list of chains present in data
Usage
1 | compute_insertions(sample, metadata = NA)
|
Arguments
sample |
clonotype table, imported using 'read_mixcr_dataset' or 'read_mixcr_sample' functions |
metadata |
metadata, a named list with chain identifiers stored under the 'chain' entry - a comma-separated list of chains such as 'TRA', 'TRB', etc is expected. If set to NA will assume all chains are present |
Value
insert size table with unweighted 'freq.clonotypes' and weighted 'freq.reads' frequencies, unnormalized 'count.*' values are also provided
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.