Description Usage Arguments Value
Produces a data frame with pairwise distances between samples computed for segment usage, insert size and segment trimming size histograms. A square root of Jensen-Shannon Divergence is used as a metric. Note that no distances are computed for samples having distinct antigen receptor chain lists
1 2 | compute_rearr_stat_dist(stats_bundle, value.types = c("reads", "clonotypes"),
add.pseudocounts = F, cores = 2)
|
stats_bundle |
a set of rearrangement statistics produced by 'compute_rearr_stats' function |
value.types |
specifies whether to use weighted histograms - 'reads' or to count each clonotype once - 'clonotypes'; can specify both |
add.pseudocounts |
if true will re-compute histograms by adding a pseudocount of 1 to each histogram, including missing bins, and re-normalize them to new total |
cores |
number of cores for parallelization |
a data frame holding pairwise distances between samples for each rearrangement statistic
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.