DoPaCMAP: DoPaCMAP

In milescsmith/ReductionWrappers: Wrapper exposing several Python dimensional reduction tools

DoPaCMAP

Description

Perform PaCMAP projection on a Seurat object using the pacmap library

Usage

DoPaCMAP(object, assay_use = "RNA", reduction_save = "PAC", ...)

Arguments

object	A Seurat or SingleCellExperiment object to be transformed.
assay_use	Assay on which to perform dimensional reduction
reduction_save	Name to use for the reduction (i. e. tsne, umap, etc...). Default: PAC
...	Extra parameters to pass to the PaCMAP function.

milescsmith/ReductionWrappers documentation built on March 25, 2023, 11:58 a.m.