HighlightGroupDimPlot: HighlightGroupDimPlot

In milescsmith/enhancedDimPlot: Generate Scatterplots of scRNAseq Data

Description

HighlightGroupDimPlot

Usage

HighlightGroupDimPlot(object, ...)

## S3 method for class 'Seurat'
HighlightGroupDimPlot(object, reduction = "tsne",
  grouping_var = NULL, highlight_group = NULL,
  highlight_color = "#E41A1C", highlight_alpha = 1,
  contrast_color = "#AAAAAA", contrast_alpha = 0.75, dim_1 = 1,
  dim_2 = 2, pt_size = 1, force = 1, label = TRUE,
  label_size = 3, label_text_color = "black", ...)

Arguments

object	scRNAseq data object
...	Additional parameters
reduction	dimensional reduction to use. Default: tsne
grouping_var	Metadata variable to use in grouping data. If none is provided, the current ident will be used. Default: NULL
highlight_group	Particular group to highlight. Default: NULL
highlight_color	Color to highlight chosen group with. Default: red
highlight_alpha	Highlight group point alpha. Default: 1 (i.e. fully opaque)
contrast_color	Color to use for all other groups. Default: grey
contrast_alpha	Contrast group point alpha. Default: 0.75
dim_1	Dimension to display along the x-axis. Default: 1
dim_2	Dimension to display along the y-axis. Default: 2
pt_size	Point size. Default: 1
force	Force parameter to pass to ggrepel. See geom_label_repel
label	Should labels be shown? Default: TRUE
label_size	Label font size. Default: 3
label_text_color	Label font color. Default: black

milescsmith/enhancedDimPlot documentation built on March 17, 2021, 4:20 a.m.