emptyEnhancedDimPlot: emptyEnhancedDimPlot

In milescsmith/enhancedDimPlot: Generate Scatterplots of scRNAseq Data

Description

Create a scatter plot where the points are not displayed but labels for each group are.

Usage

emptyEnhancedDimPlot(object, ...)

## S3 method for class 'Seurat'
emptyEnhancedDimPlot(object, reduction = "tsne",
  grouping_var = NULL, group_plot = NULL, dim_1 = 1, dim_2 = 2,
  pt_size = 1, alpha = 1, force = 1, label = TRUE,
  label_size = 3, label_text_color = "black", ...)

Arguments

object	scRNAseq data object
...	Additional parameters
reduction	dimensional reduction to use. Default: tsne
grouping_var	Metadata variable to use in grouping data. If none is provided, the current ident will be used. Default: NULL
group_plot	If provided, only this identity group will be displayed. Default: NULL
dim_1	Dimension to display along the x-axis. Default: 1
dim_2	Dimension to display along the y-axis. Default: 2
pt_size	Point size. Default: 1
alpha	Point alpha. Default: 1 (i.e. fully opaque)
force	Force parameter to pass to ggrepel. See geom_label_repel
label	Should labels be shown? Default: TRUE
label_size	Label font size. Default: 3
label_text_color	Label font color. Default: black

milescsmith/enhancedDimPlot documentation built on March 17, 2021, 4:20 a.m.