cytosee_flowSOM: Run the flowSOM algorithm
In mingchen-lab/cytosee: automatic computation and evaluation of cytometry data
View source: R/cytosee_clustering.R
Description
Method to run general FlowSOM workflow. Will scale the data and uses consensus meta-clustering.
Usage
1
2
cytosee_flowSOM(object, K, nClus = NULL,
method = "metaClustering_consensus")
Arguments
object
an object of cytosee class.
K
Maximum number of clusters to try out.
nClus
Exact number of clusters to use. If not NULL, max will be ignored.
method
Clustering method to use, given as a string. Options are metaClustering_consensus,metaClustering_hclust, metaClustering_kmeans,metaClustering_som
mingchen-lab/cytosee documentation built on May 6, 2019, 8:34 p.m.
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View source: R/cytosee_clustering.R
Description
Method to run general FlowSOM workflow. Will scale the data and uses consensus meta-clustering.
Usage
1 2 | cytosee_flowSOM(object, K, nClus = NULL,
method = "metaClustering_consensus")
|
Arguments
object |
an object of |
K |
Maximum number of clusters to try out. |
nClus |
Exact number of clusters to use. If not NULL, max will be ignored. |
method |
Clustering method to use, given as a string. Options are metaClustering_consensus,metaClustering_hclust, metaClustering_kmeans,metaClustering_som |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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