classifySeqMotifs: Classifies motifs within given DNA sequence

Description Usage Arguments Value Examples

View source: R/classifyMotifs.R

Description

A function that creates a motif PWM based on given DNA consensus sequence and finds matches within the MotifDb database

Usage

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classifySeqMotifs(consensusSeq)

Arguments

consensusSeq

A string indicating a desired consensus sequence (i.e. Contains only "A", "T", "C", "G")

Value

Returns matchNames - A value of class character vector indicating motif match names

Examples

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data(jaspar.scores, package="MotifFunc")
jaspar.scores
matchNames <- MotifFunc::classifySeqMotifs("AGCGTAGGCGT")

minhanho/MotifFunc documentation built on Dec. 8, 2019, 1:46 p.m.