classifySeqMotifs: Classifies motifs within given DNA sequence
In minhanho/MotifFunc: Functionality Visualization for Motifs
Description
Usage
Arguments
Value
Examples
View source: R/classifyMotifs.R
Description
A function that creates a motif PWM based on given DNA consensus sequence
and finds matches within the MotifDb database
Usage
1
classifySeqMotifs(consensusSeq)
Arguments
consensusSeq
A string indicating a desired consensus sequence (i.e.
Contains only "A", "T", "C", "G")
Value
Returns matchNames - A value of class character vector indicating
motif match names
Examples
1
2
3
data(jaspar.scores, package="MotifFunc")
jaspar.scores
matchNames <- MotifFunc::classifySeqMotifs("AGCGTAGGCGT")
minhanho/MotifFunc documentation built on Dec. 8, 2019, 1:46 p.m.
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Description Usage Arguments Value Examples
View source: R/classifyMotifs.R
Description
A function that creates a motif PWM based on given DNA consensus sequence and finds matches within the MotifDb database
Usage
1 | classifySeqMotifs(consensusSeq)
|
Arguments
consensusSeq |
A string indicating a desired consensus sequence (i.e. Contains only "A", "T", "C", "G") |
Value
Returns matchNames - A value of class character vector indicating motif match names
Examples
1 2 3 | data(jaspar.scores, package="MotifFunc")
jaspar.scores
matchNames <- MotifFunc::classifySeqMotifs("AGCGTAGGCGT")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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