NEWS.md

In mireia-bioinfo/plotRegulome: Plot Islet Regulome data

plotRegulome 0.2.2

• Fixed bug in which gene exons were not filled.

plotRegulome 0.2.1

• Added legend for RNA-seq data (islet-specific genes).

plotRegulome 0.2.0

• create_xxxRegulome() functions now accept characters and dataframes as coordintes argument, not only GRanges objects.
• Added examples for create_xxxRegulome().
• Renamed cluster_dataset to clusters_dataset for consistency reasons.
• Renamed generic S3 method from plot() to plotR().
• Added legend for gene annotation. It is only included when plotting using the S3 method plotR, but not when unsing plotRegulome function.

plotRegulome 0.1.0

• Changed whole database structure and file loading.
• Added downloadIRB() function for downloading required IRB datasets.
• Added randomIRB parameter in plotRegulome() to randomly generate Islet Regulome plots.
• Fixed great amount of warnings and messages when producing the plot.
• Fixed error get_legend() when no chromatin maps in view.
• Fixed bug with legend when tfs_dataset="".
• Added vignette using_plotRegulome.
• Added a NEWS.md file to track changes to the package.

mireia-bioinfo/plotRegulome documentation built on July 3, 2024, 3:34 p.m.