README.md

In mirvie/mirmodels: Models Built by the Informatics Team at Mirvie

mirmodels

Installation

1. In R, run

   install.packages("BiocManager", repo = "https://cran.rstudio.com/")
   

2. In R, run

   BiocManager::install(c("arrow", "BiocParallel", "broom", "car", 
                          "checkmate", "clipr", "DescTools", "DESeq2", 
                          "dials", "doFuture", "doParallel", "dplyr", 
                          "edgeR", "embed", "forcats", "foreach", "fs", 
                          "furrr", "future", "generics", "ggplot2", 
                          "ggpmisc", "ggrepel", "ggthemes", "glmnet", 
                          "glue", "janitor", "knitr", "magrittr", "MASS", 
                          "matrixStats", "mlbench", "mockery", "pacman", 
                          "parsnip", "pROC", "purrr", "RcppRoll", 
                          "readr", "recipes", "rlang", "rmarkdown", 
                          "rprojroot", "rrcov", "rsample", "scales", 
                          "spelling", "strex", "stringr", "styler", 
                          "testthat", "tibble", "tidyr", "tune", 
                          "usethis", "vip", "withr", "workflows", 
                          "xgboost", "yardstick", "zoo"))
   

3. The tar.gz files are at built/mirmodels_x.x.x.tar.gz. At the command line, enter

   commandline R CMD INSTALL {path-to-latest-targz-file}

Documentation

See the pkgdown site at https://mirvie.gitlab.io/mirmodels/.

Building

To build the package, set your working directory to the root of the package, i.e. the directory containing DESCRIPTION. Then at the terminal run Rscript build.R. This will create the built package as a .tar.gz in built/.

Testing

In R, run devtools::test().

mirvie/mirmodels documentation built on Jan. 14, 2022, 11:12 a.m.