cbk.plot.chart: Visualze IONML as intensity chart
In misasa/chelyabinsk: Express geochemical datasets

Description Usage Arguments Value Examples

Visualze IONML as intensity chart. This reads IONML or ion-type pmlame (R object) and plots intensity chart of elements. Two intensity charts will be droawn with and without normalization by reference ion intensity.

1 2	cbk.plot.chart(IONML_or_pmlame, opts = NULL, t2 = 25, t3 = 60, ref = "int_29Si", acq = "", w_size = 10, verbose = FALSE, ...)

`IONML_or_pmlame`	IONML (xml file) or ion-type pmlame (R object).
`opts`	List of further options for plot. See cbk.plot.
`t2`	When ion starts (default: 25 s).
`t3`	When ion ends (default: 60 s).
`ref`	Reference ion species (default: "int_29Si").
`acq`	Name of analysis such as ‘ref_cpx_klb1@1’ (default: "").
`w_size`	Window size for moving average (default: 10).
`verbose`	Output debug info (default: FALSE).
`...`	Graphical options that are passed to matplot and legend, such as ‘col’ and ‘pch’.

@return A pmlame used to plot the diagram.

ionml.xml <- cbk.path("ref_cpx_klb1@1.xml")
message(sprintf("The ionml.xml is located at |%s|.",ionml.xml))
cbk.plot.chart(ionml.xml,acq="ref_cpx_klb1@1")

pmlame <- cbk.read.ionml(ionml.xml,representative_time=TRUE)
cbk.plot.chart(pmlame)