tabulate_shared_TCR_chains: Tabulate the shared TCRs chains in pairs of single-cell...

In mjdufort/TCRtools: Helper functions for analyzing TCR sequence data from single-cell RNA-seq

Description

Aggregate a set of TCR chain matches to generate a table with pairs of libraries and the number of chains shared between the libraries.

Usage

tabulate_shared_TCR_chains(
     tcr_chain_matches,
     tcr1_col="tcr1", tcr2_col="tcr2")

Arguments

tcr_chain_matches	a data frame containing the TCR chain matches. Should contain, at minimum, the identifiers for the two TCRs. Often the output of match_TCR_chains.
tcr1_col, tcr2_col	numbers or names of the columns containing the identifiers

Value

A data frame containing the two TCR identifiers and the number of chains shared between them.

mjdufort/TCRtools documentation built on Sept. 12, 2021, 7:11 p.m.