extreme_input_undeut: Makes input for Extreme for bimodal analysis.

In mkajano/HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data

Makes input for Extreme for bimodal analysis.

Description

If data is missing it returns non-deuterated data in these columns.

Usage

extreme_input_undeut(hm_dir, replicates, timepoints, output_path = "NA")

Arguments

hm_dir	directory in which all the folders which needs to be processed are
replicates	number of replicates in sample
timepoints	lists timepoints used in experiments.
output_path	directory where output should be written

Value

Inputs for extreme for all data prepared.

Examples

path_to_folders<-system.file("extdata",  package = "HDXBoxeR")
extreme_input_undeut(hm_dir=path_to_folders, replicates = 3,
timepoints =c(3, 60, 1800, 72000), output_path=tempdir())

mkajano/HDXBoxeR documentation built on April 23, 2024, 12:28 a.m.