alignStrands: Aligns strands between 2 summary statistics data

In mkelcb/shaprs: shaPRS Polygenic Score Tool

Aligns strands between 2 summary statistics data

Description

Aligns strands between 2 summary statistics data

Usage

alignStrands(
  inputData,
  A1.x = "A1.x",
  A2.x = "A2.x",
  A1.y = "A1.y",
  A2.y = "A2.y",
  discardAmbiguousSNPs = T
)

Arguments

inputData	dataframe of both studies with columns: A1.x, A2.x, A1.y, A2.y
A1.x	(optional) column name for A1 allele in study 1 (default "A1.x")
A2.x	(optional) column name for A2 allele in study 1 (default "A2.x")
A1.y	(optional) column name for A1 allele in study 2 (default "A1.y")
A2.y	(optional) column name for A1 allele in study 2 (default "A2.y")
discardAmbiguousSNPs	(optional) if ambiguous SNPs (G/C and A/T) should be discarded (default TRUE)

Value

returns real value of the approximate correlation

mkelcb/shaprs documentation built on Feb. 7, 2023, 7:16 p.m.