inverse_metaAnalaysis: Generic inverse variance meta analysis
In mkelcb/shaprs: shaPRS Polygenic Score Tool
inverse_metaAnalaysis R Documentation
Generic inverse variance meta analysis
Description
Convenience function to produce the combined phenotype estimate if we only have summary stats for phenoA and pheno B
Usage
inverse_metaAnalaysis(proximal, adjunct, rho = 0, discardAmbiguousSNPs = T)
Arguments
proximal
dataframe for main proximal
adjunct
dataframe for other proximal
rho
(optional) overlap between studies
discardAmbiguousSNPs
(optional) if ambiguous SNPs (G/C and A/T) should be discarded (default TRUE)
Value
returns Combinedpheno dataframe that can be plugged into shaPRS_blend or shaPRS_composite
mkelcb/shaprs documentation built on Feb. 7, 2023, 7:16 p.m.
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| inverse_metaAnalaysis | R Documentation |
Generic inverse variance meta analysis
Description
Convenience function to produce the combined phenotype estimate if we only have summary stats for phenoA and pheno B
Usage
inverse_metaAnalaysis(proximal, adjunct, rho = 0, discardAmbiguousSNPs = T)
Arguments
proximal |
dataframe for main proximal |
adjunct |
dataframe for other proximal |
rho |
(optional) overlap between studies |
discardAmbiguousSNPs |
(optional) if ambiguous SNPs (G/C and A/T) should be discarded (default TRUE) |
Value
returns Combinedpheno dataframe that can be plugged into shaPRS_blend or shaPRS_composite
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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