Man pages for mknoll/imageanalysisBrain
Analysis of Brain Imaging Data
| brainImage-class | An S4 class representing an brain image |
| calcXScalingFactor | Calculate a scaling factor to allow inter-patient comparisons |
| checkClass | Checks if object is of given class and stops if not. |
| decodeCOORDtoXYZ | Decode coordinates |
| decodeCOORDToXYZDf | Convert COORD value to (x,y,z) |
| determineTissueClasses | Determine tissue classes |
| encodeXYZToCOORD | Encode coordinates |
| fitDensityFunGetX | Helper function for density function approximation |
| getCoords | Get all encoded coordinates |
| getExtremalValues | Find extremal values (min+max). |
| getImage | Returns an image instance |
| getMeasurements | Get all values as vector |
| getNumberOfMeasurements | Get Number of measurements (non NA) |
| getOrigin | Get Center of origin |
| getThresholds | Get tissue class thresholds |
| getTissueSubclasses | Create images for each identified tissue subclass. |
| getXFactor | Get X-Scaling factor |
| getXFromCOORD | Extracts x-values |
| getXRange | Find largest X-Dimension value |
| getYFromCOORD | Extracts y-values |
| getZeroKoord | Find points of origins |
| getZFromCOORD | Extracts z-values |
| identifyMinima | identifies minima in a given set of values |
| imageanalysisBrain-package | Analysis of Brain Imaging Data |
| initialize-brainImage-method | Constructor brainImage |
| plotZSlice | Plot z slice of brainImage instance |
| setCoordToNA | Set selected coordinates to NA |
| setThresholds | Set tissue class thresholds |
