brainImage-class: An S4 class representing an brain image

Description Slots

Description

An S4 class representing an brain image

Slots

.Data

see EBImage::Image@.Data

colormode

see EBImage::Image@colormode

values

Via MITK exported imaging data, has the form: x,y,z,Value or Value,COORD

filename

Identifier from which the data comes from

coordBIT

size used to encode each coordinate, 10 would be enough for dimension values up to 10^2

coords

Encoded koordinates, eases set operations when manipulating volumes

measurements

actually sored measurements for this object (see: values: Value)

origin

center of origin of this volume

originVersion

method to calculate the origin might be prone to changes; therefore, a version is stored

xfactor

factor which can be used to make distances comparable between patients; Normalizes the biparietal distance to 1

xfactorVersion

see originVersion

selectedThresholds

thresholds, which might be useful when analyzing different tissue classes in MRI data

type

Name of the stored datatype (colname from the measurements column in the values dataframe)


mknoll/imageanalysisBrain documentation built on May 23, 2019, 2:01 a.m.