sink_bmg: Import cell sinking data from BMG Labtech plate...
In mlrioux/sinkworx: Import, Model, and Plot Cell Sinking Data

Description Usage Arguments Value Examples

Transforms sinking data from plate format into tidy format. Works on .txt and .csv output from FLUOStar Omega and CLARIOStar plate readers.

1 2	sink_bmg(data_folder, catalog = NA, time_units = "sec", RFU_cutoff = 10, skip = 1, export_output = FALSE, save_as = "Sink_Database.csv")

`data_folder`	folder containing the data files to be read, in quotations. Should be in the working directory.
`catalog`	optional dataframe containing experimental metadata that can be merged with the imported data files. Should include a "Plate" column containing the filename (including file extension if .csv), and "Well" in format A1, A2, etc.
`time_units`	units of time in which measurements were taken (either "sec", "min", or "hr").
`RFU_cutoff`	threshold for RFU values to be kept.
`skip`	lines to be skipped when reading raw data files; should be sufficient to skip headers/blank lines.
`export_output`	whether the resulting dataframe should be exported to .csv.
`save_as`	desired filename, if results are to be exported.

A single dataframe containing tidied data from all files in data_folder, as well as experimental metadata if catalog is supplied. Creates the columns "Well", "Elapsed.Time.m", "RFU", and "Plate" (filename without extension).