sink_rfu: Plot fluorescence versus time by well

In mlrioux/sinkworx: Import, Model, and Plot Cell Sinking Data

Description

This function plots fluorescence versus time for each well on a well plate following a sinking assay. The goal is to simply visualize the data; no data transformation or model fitting happens here.

Usage

sink_rfu(database_rfu, size = 3, shape = 6, colour = "darkgreen", fill = "white",
export_output = FALSE, save_as = "Sinking_RFU.pdf")

Arguments

database_rfu	dataframe containing the columns "Plate", "Well", "Elapsed.Time.m", and "RFU". Can be generated by the user, or by running the import functions on raw data files.
size	point size.
shape	point shape.
colour	point outline colour.
fill	point fill colour.
export_output	whether resulting plots should be saved to a .pdf file. Defaults to FALSE; when FALSE, plots can be viewed within RStudio.
save_as	desired filename, if results are to be exported.

Value

Plots of fluorescence (RFU) versus elapsed time for each well on a well plate. Either exported to .pdf or appear in the plot viewer.

Examples

sink_rfu(Sink_Database, size = 4, shape = 1, colour = "blue", export_output = TRUE, save_as = "Sinking_Plots.pdf")

mlrioux/sinkworx documentation built on June 2, 2020, 10:28 p.m.