| DensityData-class | An S4 class to represent density data used by flowLearn. |
| flAdd | Adds one row (i.e. one density) to an existing DensityData... |
| flAddFlowFrame | Adds densities from a flowFrame that represents a parent cell... |
| flAlignThreshold | Aligns two densities A and B with each other and transfers a... |
| flAt | Returns a single density from the data slot at the specified... |
| flConcat | Concatenates two DensityData objects. |
| flData | Getter for the "data" slot |
| flDerivativeDtwDistanceMatrix | Given two R density objects, calculates a distance matrix... |
| flDtwMain | Wrapper function to carry out DDTW for flowLearn. |
| flEstimateDensity | Estimates a density on a given data vector. |
| flEvalF1ScoreFCS | Given a DensityData object with existing thresholds,... |
| flFind | Returns a new DensityData object with a subset of entries of... |
| flGetDensity | Returns a list(x,y) with density x and y values for the given... |
| flGetGate | Returns a matrix with two columns which represent lower and... |
| flGetGateAssignments | Given a DensityData object with existing thresholds, returns... |
| flIdentifyOutliersF1 | Identify samples outliers by the means of F1-scores. |
| flInit | Initializes a DensityData object with default values |
| flNormalizePopulationName | Normalizes population names, such that they can be used, for... |
| flNumFeatures | Getter for the "numFeatures" slot |
| flPlotDensThresh | Plots a given density and true/predicted thresholds, if... |
| flPredictThresholds | Predicts thresholds for all densities in a DensityData... |
| flSampleBcellEvaluationData | Example evaluation data matching flSampleDensdat. |
| flSampleDensdat | Example DensityData object, containing three samples, 16... |
| flSampleFlowFrame | Example flowFrame object, used in vignette for constructing... |
| flSelectPrototypes | Given a DensityData object, selects a number of prototype... |
| flSize | Returns the size of a given DensityData object. |
