API for mmaitenat/ideafix
ideafix, DEAmination FIXing
| Global functions | |
|---|---|
| .onAttach | Source code |
| annotate_deaminations | Man page Source code |
| calc_SB_GATK | Man page |
| calc_SB_Guo | Man page |
| check_algorithm | Man page |
| check_arguments | Man page Source code |
| check_descriptors | Man page Source code |
| check_lowercase | Man page |
| classify_variants | Man page |
| classify_variants_RF | Man page Source code |
| classify_variants_XGBoost | Man page Source code |
| extract_fa | Man page Source code |
| extract_vcf | Man page Source code |
| get_AF | Man page |
| get_RPOB | Man page |
| get_SB | Man page |
| get_alt_allele | Man page |
| get_alt_bases | Man page |
| get_base_qual | Man page |
| get_depth | Man page |
| get_descriptors | Man page Source code |
| get_fraglength | Man page |
| get_map_qual | Man page |
| get_mut_id | Man page |
| get_pos_from_end | Man page |
| get_ref_allele | Man page |
| get_ref_bases | Man page |
| get_samplename | Man page |
| get_surr_bases | Man page |
| ideafix | Man page |
| join_uncompress_targz | Man page |
| my_fun | Source code |
| one_hot_encoding | Man page Source code |
| run_ideafix | Man page Source code |
| write_region_file | Man page |
| write_vcf | Man page Source code |
