annotate_deaminations: Annotate deaminations to file
In mmaitenat/ideafix: ideafix, DEAmination FIXing

annotate_deaminations exports ideafix variant classification results to a text file. It either writes them to a new tsv file or appends them to the input vcf file provided to ideafix.

annotate_deaminations(
  classification,
  format = "tsv",
  outfolder = ".",
  outname = "ideafix_labels",
  vcf_filename = NULL
)

`classification`	tibble containing the classification generated by `classify_variants`. It is the object to be written.
`format`	character string indicating the output file format. Can be "tsv" or "vcf". Defaults to "tsv".
`outfolder`	character string naming the folder to write the file to. Defaults to current working directory (`getwd`).
`outname`	character string naming the output filename. Defaults to "ideafix_labels.txt" or "ideafix_labels.vcf", depending on `format` value .
`vcf_filename`	optional character string, only needed if `format` equals to "vcf". It indicates the path to the vcf file ideafix has been run over.