Description Usage Arguments Value
write_region_file
creates the file needed by samtools faidx to get the k
surrounding bases of the loci defined in mutation_ids
.
1 | write_region_file(ids, k, tmp_filename)
|
ids |
character vector containing the ids of the loci to get the surrounding bases of. Id format is CHR:POS and can be obtained by calling the function |
k |
integer with the number of bases to the right and to the left of the loci to get the genomic sequence from. |
tmp_filename |
character string naming the path to the file to write. |
None
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