Files in mmaitenat/ideafix
ideafix, DEAmination FIXing
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/annotate_deaminations.R
R/classify_variants.R
R/get_descriptors.R
R/ideafix.R
R/one_hot_encoding.R
R/run_ideafix.R
R/startup.R
R/utils.R
README.Rmd
README.md
ideafix.Rproj
inst/CITATION
inst/extdata/RF_final_model.tar.gz.partaa
inst/extdata/RF_final_model.tar.gz.partab
inst/extdata/RF_final_model.tar.gz.partac
inst/extdata/XGBoost_final_model.RDS
inst/extdata/descriptors.RDS
inst/extdata/mysample_classified.vcf
man/annotate_deaminations.Rd
man/calc_SB_GATK.Rd
man/calc_SB_Guo.Rd
man/check_algorithm.Rd
man/check_arguments.Rd
man/check_descriptors.Rd
man/check_lowercase.Rd
man/classify_variants.Rd
man/classify_variants_RF.Rd
man/classify_variants_XGBoost.Rd
man/extract_fa.Rd
man/extract_vcf.Rd
man/get_AF.Rd
man/get_RPOB.Rd
man/get_SB.Rd
man/get_alt_allele.Rd
man/get_alt_bases.Rd
man/get_base_qual.Rd
man/get_depth.Rd
man/get_descriptors.Rd
man/get_fraglength.Rd
man/get_map_qual.Rd
man/get_mut_id.Rd
man/get_pos_from_end.Rd
man/get_ref_allele.Rd
man/get_ref_bases.Rd
man/get_samplename.Rd
man/get_surr_bases.Rd
man/ideafix.Rd
man/join_uncompress_targz.Rd
man/one_hot_encoding.Rd
man/run_ideafix.Rd
man/write_region_file.Rd
man/write_vcf.Rd
vignettes/.gitignore
vignettes/RPOB.png
vignettes/ideafix.Rmd
vignettes/ideafix.html
