cran-comments.md

In mmollina/viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species

Re-submission of VIEWpoly (08-10-2022)

Maintainer comments

Dear CRAN Team,

This is a re-submission of VIEWpoly package. In this version (0.3.1):

• Support for diaQTL multi-population evaluation
• User-defined parents names in effects graphics
• Download of plots with RData format
• Docker image available
• Allow to exclude haplotypes from haplotypes probability view in VIEWqtl module
• Bug fixed to upload genome through genome link
• Bug fixed to upload viewpoly object
• Avoid errors if user has not internet connection
• Inform number and ID of individuals selected by haplotypes
• README updated to include new vignette for server version (available at brach publishing_data)

Thank you for reviewing our re-submission!

Test environments

The package passed through several checks (with the flag --as-cran) in the following systems:

• Local (Windows 11 v10.0.22000 Build 22000)
• Winbuilder (Windows Server 2008 R2 SP1, R-devel, 32/64 bit)
• GitHub actions (windows-latest release)
• Github actions (macOS-latest release)
• Github actions (ubuntu-20.04 release)
• Github actions (ubuntu-20.04 devel)
• R-hub (Ubuntu Linux 20.04.1 LTS, R-release, GCC)
• R-hub (Fedora Linux, R-devel, clang, gfortran)

R CMD check results

0 errors | 0 warnings | 1 note

There are one NOTE that appeared when running some checks. One of the directories containing example files exceeds 1Mb. It has a total of 4.5Mb. The examples are important to users explore the app features and file format before input their own data.

• This is a new release.

Downstream dependencies

There are currently no downstream dependencies for this package.

mmollina/viewpoly documentation built on April 5, 2025, 9:08 p.m.