NEWS.md

In mnodzenski/epistasisGA: An R package to identify multi-snp effects in nuclear family studies using the GADGETS method

Version 1.1.1 + Updated functions to improve memory usage. + Related to point 1, changed how linkage information is specified in 'preprocess.genetic.data'. See the GADGETS vignette for details. + Also in 'preprocess.genetic.data', the function no longer re-codes input genotypes based on the apparent minor allele. If, for a particular SNP, an analyst wants the genotype coded '1' to represent 1 copy of the minor allele and '2' to represent two copies of the minor allele, they need to code the genotypes in that way before inputting the data. With that said, the functions in this package are invariant to genotype coding choice (and always have been) and results will be the same regardless. It is therefore completely unnecessary to do any re-coding, which is the reason we have removed that step from the function. + Added in experimental functionality for GxGxE search and maternal-fetal effects

Version 1.1.0 + accepted to Bioconductor

Version 0.99.0 + pushed to github

mnodzenski/epistasisGA documentation built on Jan. 17, 2023, 7:07 p.m.