sub-subset-Seurat: Add Subobjects

In mojaveazure/seurat-object: Data Structures for Single Cell Data

Add Subobjects

Description

Add subobjects containing expression, dimensional reduction, or other containerized data to a Seurat object. Subobjects can be accessed with [[ and manipulated directly within the Seurat object or used independently

Usage

## S4 replacement method for signature 'Seurat,character,missing,Assay'
x[[i, j, ...]] <- value

## S4 replacement method for signature 'Seurat,character,missing,Assay5'
x[[i, j, ...]] <- value

## S4 replacement method for signature 'Seurat,character,missing,DimReduc'
x[[i, j, ...]] <- value

## S4 replacement method for signature 'Seurat,character,missing,Graph'
x[[i, j, ...]] <- value

## S4 replacement method for signature 'Seurat,character,missing,Neighbor'
x[[i, j, ...]] <- value

## S4 replacement method for signature 'Seurat,character,missing,SeuratCommand'
x[[i, j, ...]] <- value

## S4 replacement method for signature 'Seurat,character,missing,SpatialImage'
x[[i, j, ...]] <- value

Arguments

x	A Seurat object
i	Name to add subobject as
j	Ignored
...	Ignored
value	A valid subobject (eg. a v3 or v5 assay, or a dimensional reduction)

Value

x with value added as i

See Also

See here for pulling subobjects using [[, here for adding metadata with [[<-, and here for removing subobjects and cell-level meta data with [[<-

Seurat object, validity, and interaction methods $.Seurat(), Seurat-class, Seurat-validity, [[.Seurat(), [[<-,Seurat,NULL, dim.Seurat(), dimnames.Seurat(), merge.Seurat(), names.Seurat(), subset.Seurat()

mojaveazure/seurat-object documentation built on Dec. 13, 2024, 9:23 a.m.