v5-assay-summaries: V5 Assay Summaries

In mojaveazure/seurat-object: Data Structures for Single Cell Data

V5 Assay Summaries

Description

Summary maths for StdAssay Objects

Usage

## S4 method for signature 'StdAssay'
colMeans(x, na.rm = FALSE, dims = 1, layer = NULL, ...)

## S4 method for signature 'StdAssay'
colSums(x, na.rm = FALSE, dims = 1, layer = NULL, ...)

## S4 method for signature 'StdAssay'
rowMeans(x, na.rm = FALSE, dims = 1, layer = NULL, ...)

## S4 method for signature 'StdAssay'
rowSums(x, na.rm = FALSE, dims = 1, layer = NULL, ...)

Arguments

x	an array of two or more dimensions, containing numeric, complex, integer or logical values, or a numeric data frame. For .colSums() etc, a numeric, integer or logical matrix (or vector of length m * n).
na.rm	logical. Should missing values (including NaN) be omitted from the calculations?
dims	integer: Which dimensions are regarded as ‘rows’ or ‘columns’ to sum over. For row*, the sum or mean is over dimensions dims+1, ...; for col* it is over dimensions 1:dims.
layer	Name of layer to run function on
...	Ignored

Value

The results of the summary math function for the layer specified

mojaveazure/seurat-object documentation built on Dec. 13, 2024, 9:23 a.m.