API for molgenis/NIPTeR
Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing

Global functions
BuildFullModel Source code
CalculateVariation Source code
CorrectGcWithWeights Source code
GetCorrectionFactor Source code
GetMeanNumberOfReadsGcStep Source code
GetNextPredictor Source code
PredictTrisomy Source code
RetrieveSubsets Source code
SelectModelsFixedRegressionApproach Source code
SelectModelsFixedRegressionApproach.CombinedStrands Source code
SelectModelsFixedRegressionApproach.SeparatedStrands Source code
ZScoresControl Source code
add_samples_controlgroup Man page Source code
appendchromosomes Source code
as_control_group Man page Source code
bin_bam_sample Man page Source code
bin_reads Source code
calculate_ncv_score Man page Source code
calculate_regression_scores Source code
calculate_z_score Man page Source code
chi_correct Man page Source code
chrfractions Man page Source code
chrfractions.CombinedStrands Source code
chrfractions.SeparatedStrands Source code
chrreads Source code
collapse_all_stats Source code
collapse_prac_cv_control_scores Source code
collapse_prediction_sets Source code
collapse_result Source code
collapse_results Source code
construct_sample Source code
correct.reads Source code
correct_reads_sex_chromosome Source code
correct_sample_bin Source code
correct_sample_loess Source code
correctbins Source code
correctsamples Source code
correctsamples_include_xy Source code
diagnose_control_group Man page Source code
gc_correct Man page Source code
gc_correct_NIPTControlGroup_bin Source code
gc_correct_NIPTControlGroup_loess Source code
gc_correct_NIPTSample_bin Source code
gc_correct_NIPTSample_loess Source code
get_abberant_scores Source code
get_mean_sd_shapiro Source code
get_ncv_reads Source code
get_ncv_statistics Source code
getbins Source code
getcontrolchromosomes Man page Source code
getcontrolchromosomes.CombinedStrands Source code
getcontrolchromosomes.SeparatedStrands Source code
getcorrectionstatus Source code
getfractionscontrolgroup Man page Source code
getfractionscontrolgroup.CombinedStrands Source code
getfractionscontrolgroup.SeparatedStrands Source code
getreadscontrolgroup Man page Source code
getreadscontrolgroup.CombinedStrands Source code
getreadscontrolgroup.SeparatedStrands Source code
getsamplenames Source code
getstats Source code
getstrandtype Source code
listmodels Source code
match_control_group Man page Source code
mean_correction Source code
ncv_template Source code
nipt_sample Man page
perform_regression Man page Source code
prepare_ncv Man page Source code
regression_template Source code
remove_duplicates_controlgroup Man page Source code
remove_sample_controlgroup Man page Source code
retrieve_fractions_of_interest Man page Source code
retrieve_fractions_of_interest.CombinedStrands Source code
retrieve_fractions_of_interest.SeparatedStrands Source code
rownames_additional_stats Source code
setrownamesmatrix Source code
splitchromosomes Source code
sumchiscores Source code
sumfandrautosomal Source code
sumfandrsex Source code
testtrainset Source code
unlist Source code
z_score_template Source code
molgenis/NIPTeR documentation built on May 22, 2017, 12:01 p.m.