diagnose_control_group: Diagnose control group

In molgenis/NIPTeR: Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing

Description

Compute a regular Z-score for every chromosome of every sample in a NIPTControlGroup object

Usage

diagnose_control_group(nipt_control_group)

Arguments

nipt_control_group

The NIPTControlGroup object to diagnose

Details

This function computes a regular Z-score for every chromosome of every sample in a NIPTControlGroup object. It returns a named list with diagnostics information.

The function returns a named list with 3 fields:

• Z_scores A matrix containing Z-scores for every sample and every chromosome

• abberant_scores Dataframe with samplename and chromosome of Z-scores outside -3 3 range

• control_group_statistics Matrix with mean, standard deviation and P value of Shapiro-Wilk test

Value

named list

Examples

## Not run: 
diagnose_control_group(nipt_control_group = control_group)

## End(Not run)

molgenis/NIPTeR documentation built on May 23, 2019, 6:02 a.m.