API for montilab/BS831
Boston University - Genomics Data Mining
| Global functions | |
|---|---|
| AEDAT.collapsed | Man page |
| AEDAT.collapsed.mad4k | Man page |
| AlignPlots | Source code |
| GeneSet | Man page |
| GeneSet-class | Man page |
| HNSC_RNASeq_ES | Man page |
| HNSC_RNASeq_toy_ES | Man page |
| HNSC_htseq_raw_counts_AEvsG1vsG3 | Man page |
| HNSC_htseq_raw_counts_toy_AEvsG2 | Man page |
| VERBOSE | Man page Source code Source code |
| assert | Source code |
| assign_heatmap | Source code |
| breast_loi_133p2 | Man page |
| cls.median | Source code |
| clustColors | Source code |
| clust_eset | Source code |
| colGradient | Source code |
| cosine.dst | Source code |
| cumineq | Source code |
| cv | Source code |
| cvm | Source code |
| dir.test | Source code |
| dm10 | Man page |
| dmixnorm | Source code |
| euclid.dst | Source code |
| fast.mean | Source code |
| fast.sd | Source code |
| fast.sum | Source code |
| fast.tscore | Source code |
| fetch_genes | Source code |
| file.ext | Source code |
| file.stub | Source code |
| file.test | Source code |
| g_legend | Source code |
| genIndex | Source code |
| genName | Source code |
| ggheat.continuous | Man page Source code |
| ggheat.continuous.group | Man page Source code |
| ggheat.continuous.single | Man page Source code |
| ggheat.make.groups | Man page Source code |
| hcopt | Source code Source code |
| heatmap.ggplot2 | Man page Source code |
| hello | Man page |
| hyperEnrichment | Man page |
| installR | Source code |
| interleave | Source code |
| knn.estimate | Source code |
| knn.summary | Source code |
| ksGenescore | Source code |
| limmaDiffanal | Source code |
| list.append | Source code |
| list.intersect | Source code |
| list2table | Source code |
| ljust | Source code |
| lmchoose | Source code |
| load.var | Source code |
| log.minus | Source code Source code |
| log.plus | Source code Source code |
| lookup.fun | Source code |
| make.dir | Source code |
| make_legend | Source code |
| make_legend_continuous | Source code |
| make_legend_list | Source code |
| many2one | Source code |
| many2one.cls | Source code |
| match.nona | Source code |
| matchIndex | Source code |
| matrix2list | Source code |
| mchoose | Source code |
| merge_labels | Source code |
| mixnormfit | Source code |
| mmatch | Source code |
| my.levels | Source code Source code |
| my.nlevels | Source code Source code |
| my.tabulate | Source code |
| my.write.table | Source code |
| naive.estimate | Source code |
| naive.eval | Source code |
| naive.predict | Source code |
| naive.predict.in | Source code |
| names.naive.bayes | Source code |
| ntabulate | Source code |
| part.cor | Source code |
| pearson.dst | Source code |
| plot.distn | Source code |
| plot.mclust | Source code |
| plot.mixnorm | Source code |
| plot.norm | Source code |
| plotAll | Source code |
| precision | Source code Source code |
| predict.mixnorm | Source code |
| pruneFactor | Source code |
| pruneFactors | Source code |
| pval2fdr | Source code |
| qmixnorm | Source code |
| read.csv.delim | Source code |
| read.delim.wsave | Source code |
| read.gmt | Source code |
| read.tab.delim | Source code |
| renamedBreastDB | Man page |
| repmat | Source code |
| rjust | Source code |
| rmixnorm | Source code |
| robust.load | Source code |
| rowMax | Source code |
| rowMin | Source code |
| run_assign | Source code |
| run_deseq | Source code |
| run_edgeR | Source code |
| run_limma | Source code |
| scale01 | Source code |
| scale_row | Source code |
| sd.map | Source code |
| segment.overlap | Source code |
| sig_frame | Source code |
| spearman.dst | Source code |
| strip.path | Source code |
| summarize_results | Source code |
| table2list | Source code |
| to.hex | Source code |
| uniquefy | Source code |
| upper.case | Source code |
| value.cap | Source code |
| var2string | Source code |
| variationFilter | Source code |
| which.2D | Source code |
| which.rowMax | Source code |
| which.rowMin | Source code |
| write.gmt | Source code |
| zebrafish_cufflinks_counts_fpkm_eSet | Man page |
| zebrafish_htseq_raw_counts_eSet | Man page |
