Files in montilab/CaDrA
Candidate Driver Analysis
.Rbuildignore
.dockerignore
.github/workflows/R-CMD-CHECK.yaml
.github/workflows/document.yaml
.github/workflows/pkgdown.yaml
.github/workflows/render-news-rmd.yml
.github/workflows/render-readme-rmd.yml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
NEWS.md
R/BRCA_GISTIC_MUT_SIG.R
R/CCLE_MUT_SCNA.R
R/CTNBB1_reporter.R
R/TAZYAP_BRCA_ACTIVITY.R
R/cadra.R
R/cadra_functions.R
R/calc_rowscore.R
R/candidate_search.R
R/custom_rowscore.R
R/ks_rowscore.R
R/meta_plot.R
R/perm_res.R
R/permutation_plot.R
R/revealer_rowscore.R
R/sim_FS.R
R/sim_scores.R
R/topn_best.R
R/topn_list.R
R/topn_plot.R
R/wilcox_rowscore.R
README.Rmd
README.md
_pkgdown.yml
data/BRCA_GISTIC_MUT_SIG.rda
data/CCLE_MUT_SCNA.rda
data/CTNBB1_reporter.rda
data/TAZYAP_BRCA_ACTIVITY.rda
data/perm_res.rda
data/sim_FS.rda
data/sim_Scores.rda
data/topn_list.rda
docker-compose.yml
install_r_packages.R
man/BRCA_GISTIC_MUT_SIG.Rd
man/CCLE_MUT_SCNA.Rd
man/CTNBB1_reporter.Rd
man/CaDrA.Rd
man/TAZYAP_BRCA_ACTIVITY.Rd
man/calc_rowscore.Rd
man/candidate_search.Rd
man/figures/summarize-1.png
man/figures/visualize.best-1.png
man/generate_permutations.Rd
man/meta_plot.Rd
man/perm_res.Rd
man/permutation_plot.Rd
man/prefilter_data.Rd
man/sim_FS.Rd
man/sim_Scores.Rd
man/topn_best.Rd
man/topn_list.Rd
man/topn_plot.Rd
src/registerDynamicSymbol.c
src/score_fun.c
tests/data/create_toy.R
tests/data/create_toy.old.R
tests/data/create_toy2.R
tests/data/toy_dataset.csv
tests/data/toy_dataset.rds
tests/data/toy_dataset2.csv
tests/data/toy_dataset2.rds
tests/testthat.R
tests/testthat/test-cadra.R
tests/testthat/test-candidate_search.R
tests/testthat/test-check_top_N.R
tests/testthat/test-custom_rowscore.R
tests/testthat/test-generate_permutations.R
tests/testthat/test-ks_plot.R
tests/testthat/test-ks_rowscore.R
tests/testthat/test-meta_plot.R
tests/testthat/test-permutation_plot.R
tests/testthat/test-prefilter_data.R
tests/testthat/test-revealer_rowscore.R
tests/testthat/test-topn_best.R
tests/testthat/test-topn_plot.R
tests/testthat/test-wilcox_rowscore.R
vignettes/docker.Rmd
vignettes/permutation_based_testing.Rmd
vignettes/scoring_functions.Rmd
