getGeneSetComposition: getGeneSetComposition

In mooneymi/gsaPermute: Gene Permutation Procedure for Unbiased Gene Set Analysis

Description

This function retrieves the size of each gene in the gene set and returns a table specifying the number of genes of each size.

Usage

getGeneSetComposition(geneSnpCounts, geneSet)

Arguments

geneSnpCounts	A list of gene sizes (number of SNPs), as created with the function getGeneSizes.
geneSet	A vector of gene IDs.

Value

Returns a table specifying the number of genes of each size.

Author(s)

Michael Mooney <[e-mail]>

See Also

getGeneSizes

Examples

data(sampleGSA)

# Get gene sizes, and bin genes by size
snpCounts = getGeneSizes(snpMap)
  
# Get the composition of the target pathway (gene set)
gsComp = getGeneSetComposition(snpCounts, pathways[[1]])

mooneymi/gsaPermute documentation built on May 23, 2019, 6:11 a.m.