Description Usage Arguments Value See Also
This function performs Gene Ontology analysis on a list of gene. It obtains MF, BP and CC categories for a gene list, calculates enrichment P value and multiple testing correction based on Bonferroni method. Finally for each MF, BP and CC it selects only the categories for which corrected P value is less or equal to 0.05. Returns a data frame with GO categories.
1 |
data |
a vector of ENTREZ Gene IDs. |
background |
a vector ENTREZ Gene IDs used as the universe for the hypergeometric calculation, also ENTREZ Gene IDs. |
annotation |
- a string giving the name of the annotation data package with
GO annotation. See |
data frame object with GO results. Columns: Ontology (MF, BP or CC), GOID, Pvalue, OddsRatio, ExpCount, Count, Size, Term, P.Bonferroni
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