Man pages for morphos30/DeepG4
A deep learning approach to predict active G-quadruplexes
| DeepG4 | DeepG4 main function to predict a probability to form a G4,... |
| DeepG4InputFromBED | Pre-Computing function of DeepG4. To use before DeepG4 main... |
| DeepG4Scan | Standard method to call |
| DNAToNumerical | Convert DNAStringSet object into one-hot encoding |
| dot-callDeepG4Scan | Scanning of potential active G4 on a sequence or a list of... |
| dot-callDeepG4ScanATAC | Scanning of potential active G4 on a sequence or a list of... |
| ExtractMotifFromModel | ExtractMotifFromModel allow the user to extract motifs who... |
| ExtractSubSequence | ExtractSubSequencefromBed : Internal function for DeepG4Scan. |
| ExtractSubSequencefromBed | ExtractSubSequencefromBed : Internal function for DeepG4Scan. |
| getScoreBW | getScoreBW extract DNA accessibility from WIG to BED... |
| NormBW | Normalize a coverage file (from bigWig or bedGraph) using... |
