ExtractSubSequence: ExtractSubSequencefromBed : Internal function for DeepG4Scan.
In morphos30/DeepG4: A deep learning approach to predict active G-quadruplexes
View source: R/ExtractSubSequence.R
ExtractSubSequence R Documentation
ExtractSubSequencefromBed : Internal function for DeepG4Scan.
Description
ExtractSubSequencefromBed : Internal function for DeepG4Scan.
Usage
ExtractSubSequence(x = NULL, k = 20, seq.size = 201)
Arguments
x
An object of class GRanges.
k
size of the sliding windows.
seq.size
numeric value representing the sequence size accepted by our model. Don't change it unless you want to use our function with a custom model.
Value
A data.frame with position of subsequence and DNA sequence.
morphos30/DeepG4 documentation built on June 11, 2022, 10:38 p.m.
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View source: R/ExtractSubSequence.R
| ExtractSubSequence | R Documentation |
ExtractSubSequencefromBed : Internal function for DeepG4Scan.
Description
ExtractSubSequencefromBed : Internal function for DeepG4Scan.
Usage
ExtractSubSequence(x = NULL, k = 20, seq.size = 201)
Arguments
x |
An object of class GRanges. |
k |
size of the sliding windows. |
seq.size |
numeric value representing the sequence size accepted by our model. Don't change it unless you want to use our function with a custom model. |
Value
A data.frame with position of subsequence and DNA sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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