dot-callDeepG4Scan: Scanning of potential active G4 on a sequence or a list of...

In morphos30/DeepG4: A deep learning approach to predict active G-quadruplexes

Scanning of potential active G4 on a sequence or a list of sequences using a sliding window of size k.

Description

Scanning of potential active G4 on a sequence or a list of sequences using a sliding window of size k.

Usage

.callDeepG4Scan(X = NULL, k = 20, treshold = 0.5, threads = 1, lower.case = F)

Arguments

X	An object of class character,list or DNAStringSet/DNAStringSetList with DNA sequences.
k	size of the sliding windows.
treshold	numeric value who define the treshold to use to consider a sequence asc ontaining an active G4.
threads	numeric value who define the number of threads used in DeepG4Scan (Generate sub sequences)
lower.case	a boolean. Set to TRUE if elements of X are in lower case (default to FALSE).

Value

a data.frame with the position of potential active G4 across input sequences.

morphos30/DeepG4 documentation built on June 11, 2022, 10:38 p.m.