subset_fastq: Subset a FASTQ file by another FASTQ file
In mottensmann/MyR: Collection of Custom Functions
Description
By sampling sequence headers of a reference file, corresponding sequences of a query file is selected to
return the query file with the same dimension as the reference. A common case is to subset a mapping file after
reads were filtererd.
Usage
1
subset_fastq(reference = NULL, query = NULL, out = "subset.fastq")
Arguments
reference
name of the reference file
query
name of the query file
out
path to the output file
mottensmann/MyR documentation built on May 20, 2019, 8:02 p.m.
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Description
By sampling sequence headers of a reference file, corresponding sequences of a query file is selected to return the query file with the same dimension as the reference. A common case is to subset a mapping file after reads were filtererd.
Usage
1 | subset_fastq(reference = NULL, query = NULL, out = "subset.fastq")
|
Arguments
reference |
name of the reference file |
query |
name of the query file |
out |
path to the output file |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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