Man pages for mpierrejean/jointSeg-1
Joint Segmentation of Multivariate (Copy Number) Signals
| anotherBkp | Get best candidate change point |
| binMissingValues | binMissingValues |
| defaultWeights | Compute default weights for the weighted group fused Lasso |
| doCBS | Run CBS segmentation |
| doDynamicProgramming | Run segmentation by dynamic programming |
| doGFLars | Group fused Lars segmentation |
| doPSCBS | Run Paired PSCBS segmentation |
| doPSCN | Run PSCN segmentation (defunct) |
| doRBS | Run RBS segmentation |
| estimateSd | Robust standard deviation estimator |
| Fpsn | Pruned dynamic programming algorithm |
| getCopyNumberDataByResampling | Generate a copy number profile by resampling |
| getTpFp | Calculate the number of true positives and false positives |
| getUnivJ | Get the contribution of one dimension to the RSE. |
| getUnivStat | Get the binary test statistic for one dimension |
| jointSeg | Joint segmentation of multivariate signals |
| leftMultiplyByInvXAtXA | leftMultiplyByInvXAtXA |
| leftMultiplyByXt | leftMultiplyByXt |
| mapPositionsBack | mapPositionsBack |
| modelSelection | Model selection |
| multiplyXtXBySparse | multiplyXtXBySparse |
| oneBkp | Get best candidate change point |
| plotSeg | Plot signal and breakpoints with segment-level signal... |
| prof | profile time and memory usage of a given R expression |
| pruneByDP | Exact segmentation of a multivariate signal using dynamic... |
| PSSeg | Parent-Specific copy number segmentation |
| randomProfile | Generate a random multi-dimensional profile with breakpoints... |
| retour_sn | Extract endpoint matrix from DP result |
| segmentByGFLars | Group fused Lars segmentation (low-level) |
| segmentByRBS | Recursive Binary Segmentation (low-level) |
