Files in mpierrejean/jointSeg-1
Joint Segmentation of Multivariate (Copy Number) Signals
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/ERMadjustment.R
R/PSSeg.R
R/anotherBkp.R
R/binMissingValues.R
R/chooseK.R
R/defaultWeights.R
R/doCBS.R
R/doDynamicProgramming.R
R/doGFLars.R
R/doPSCBS.R
R/doPSCN.R
R/doRBS.R
R/estimateSd.R
R/getCopyNumberDataByResampling.R
R/getTpFp.R
R/getUnivJ.R
R/getUnivStat.R
R/jointSeg.R
R/leftMultiplyByInvXAtXA.R
R/leftMultiplyByXt.R
R/mapPositionsBack.R
R/modelSelection.R
R/multiplyXtXBySparse.R
R/oneBkp.R
R/plotSeg.R
R/prof.R
R/pruneByDP.R
R/pruned_DP_C_access.R
R/randomProfile.R
R/segmentByGFLars.R
R/segmentByRBS.R
README.md
_pkgdown.yml
appveyor.yml
cran-comments.md
inst/CITATION
inst/eval/GSE11976/00.setup.R
inst/eval/GSE11976/01.createDataSets.R
inst/eval/GSE11976/02a.RBS+DP.R
inst/eval/GSE11976/02c.cghseg.R
inst/eval/GSE11976/02d.CBS.R
inst/eval/GSE11976/02e.PSCBS.R
inst/eval/GSE11976/02f.GFLars.R
inst/eval/GSE11976/03.perf.R
inst/eval/GSE11976/04.pAUC.R
inst/eval/GSE11976/05.pAUCcurves.R
inst/eval/GSE11976/06.pAUCtable.R
inst/eval/GSE11976/SnrForCaughtAndMissedBkp.R
inst/eval/GSE11976/myImagePlot.R
inst/eval/GSE29172/00.setup.R
inst/eval/GSE29172/01.createDataSets.R
inst/eval/GSE29172/02a.RBS+DP.R
inst/eval/GSE29172/02c.cghseg.R
inst/eval/GSE29172/02d.CBS.R
inst/eval/GSE29172/02e.PSCBS.R
inst/eval/GSE29172/02f.GFLars.R
inst/eval/GSE29172/03.perf.R
inst/eval/GSE29172/04.pAUC.R
inst/eval/GSE29172/05.pAUCcurves.R
inst/eval/GSE29172/06.pAUCtable.R
inst/eval/GSE29172/SnrForCaughtAndMissedBkp.R
inst/eval/GSE29172/myImagePlot.R
inst/figures/SNR.R
inst/figures/cnProfiles.tex
inst/figures/copyNumberData.R
inst/figures/evalTPFP.R
inst/otherMethods/ASCAT/doASCAT.R
inst/otherMethods/ASCAT/downloadASCAT.R
inst/otherMethods/ASCAT/predictGG.R
inst/otherMethods/ASCAT/runASCAT.R
inst/otherMethods/CnaStruct/doCnaStruct.R
inst/otherMethods/PELT/doPelt.R
inst/otherMethods/PELT/doPelt.Rnw
inst/otherMethods/PELT/jointSeg.bib
inst/otherMethods/PSCN/doPSCN.R
inst/syntheticProfiles/customRegionProba.R
inst/syntheticProfiles/firestorm.R
inst/syntheticProfiles/sawtooth.R
inst/time/00.setup.R
inst/time/R/00.setup.R
inst/time/R/01.createDataSets.R
inst/time/R/02a.RBS+DP.R
inst/time/R/02b.PSCN.R
inst/time/R/02c.cghseg.R
inst/time/R/02d.CBS.R
inst/time/R/02e.PSCBS.R
inst/time/R/02f.GFLars.R
inst/time/R/02g.CnaStruct.R
inst/time/R/02i.DPSeg2d.R
inst/time/R/Script.R
man/Fpsn.Rd
man/PSSeg.Rd
man/anotherBkp.Rd
man/binMissingValues.Rd
man/defaultWeights.Rd
man/doCBS.Rd
man/doDynamicProgramming.Rd
man/doGFLars.Rd
man/doPSCBS.Rd
man/doPSCN.Rd
man/doRBS.Rd
man/estimateSd.Rd
man/getCopyNumberDataByResampling.Rd
man/getTpFp.Rd
man/getUnivJ.Rd
man/getUnivStat.Rd
man/jointSeg.Rd
man/leftMultiplyByInvXAtXA.Rd
man/leftMultiplyByXt.Rd
man/mapPositionsBack.Rd
man/modelSelection.Rd
man/multiplyXtXBySparse.Rd
man/oneBkp.Rd
man/plotSeg.Rd
man/prof.Rd
man/pruneByDP.Rd
man/randomProfile.Rd
man/retour_sn.Rd
man/segmentByGFLars.Rd
man/segmentByRBS.Rd
src/Heap.cpp
src/Heap.h
src/Node.cpp
src/Node.h
src/Rwrappers.cc
src/colibri.cc
src/colibri.h
src/init.c
src/liste.cc
src/liste.h
src/polynome2.h
tests/testthat.R
tests/testthat/test_getCopyNumberDataByResampling.R
tests/testthat/test_jointSeg.R
tests/testthat/test_prunedDPA.R
vignettes/PSSeg.Rmd
vignettes/dataGeneration.Rmd
vignettes/jointseg.bib
