Preprocess_CancerSite_Methylation27k: The Preprocess_CancerSite_Methylation27k function
In mpru/BIMEGA: BIMEGA: BIvariate Methylation and Expression GAussian mixture model
Description
Usage
Arguments
Value
Description
Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.
Usage
1
2
Preprocess_CancerSite_Methylation27k(CancerSite, METdirectory,
MissingValueThreshold = 0.2)
Arguments
CancerSite
character of length 1 with TCGA cancer code.
METdirectory
character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function.
MissingValueThreshold
threshold for removing samples or genes with missing values.
Value
List with pre processed methylation data for cancer and normal samples.
mpru/BIMEGA documentation built on May 23, 2019, 6:34 a.m.
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Description Usage Arguments Value
Description
Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.
Usage
1 2 | Preprocess_CancerSite_Methylation27k(CancerSite, METdirectory,
MissingValueThreshold = 0.2)
|
Arguments
CancerSite |
character of length 1 with TCGA cancer code. |
METdirectory |
character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function. |
MissingValueThreshold |
threshold for removing samples or genes with missing values. |
Value
List with pre processed methylation data for cancer and normal samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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