Files in mrb20045/CaSilico
In silico crRNA design for different CRISPR-Cas subtypes
DESCRIPTION
NAMESPACE
R/Cas_Type.R
README.md
inst/data/3D.fasta
inst/data/genomes_off_target/Example_1.fasta
inst/data/genomes_off_target/Example_2.fasta
inst/data/genomes_off_target/Example_3.fasta
inst/dependency_linux/Blastn/RNAfold
inst/dependency_linux/Blastn/RNAplot
inst/dependency_linux/Blastn/blastn
inst/dependency_linux/Blastn/makeblastdb
inst/dependency_linux/mafft-linux64/mafft.bat
inst/dependency_linux/mafft-linux64/mafftdir/bin/mafft
inst/dependency_linux/mafft-linux64/mafftdir/libexec/addsingle
inst/dependency_linux/mafft-linux64/mafftdir/libexec/contrafoldwrap
inst/dependency_linux/mafft-linux64/mafftdir/libexec/countlen
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dash_alignments
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dash_client
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dash_sequences.fa
inst/dependency_linux/mafft-linux64/mafftdir/libexec/disttbfast
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dndblast
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dndfast7
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dndpre
inst/dependency_linux/mafft-linux64/mafftdir/libexec/dvtditr
inst/dependency_linux/mafft-linux64/mafftdir/libexec/f2cl
inst/dependency_linux/mafft-linux64/mafftdir/libexec/filter
inst/dependency_linux/mafft-linux64/mafftdir/libexec/getlag
inst/dependency_linux/mafft-linux64/mafftdir/libexec/hat3
inst/dependency_linux/mafft-linux64/mafftdir/libexec/hex2maffttext
inst/dependency_linux/mafft-linux64/mafftdir/libexec/mafft-distance
inst/dependency_linux/mafft-linux64/mafftdir/libexec/mafft-homologs.1
inst/dependency_linux/mafft-linux64/mafftdir/libexec/mafft-profile
inst/dependency_linux/mafft-linux64/mafftdir/libexec/mafft.1
inst/dependency_linux/mafft-linux64/mafftdir/libexec/mafftash_premafft.pl
inst/dependency_linux/mafft-linux64/mafftdir/libexec/maffttext2hex
inst/dependency_linux/mafft-linux64/mafftdir/libexec/makedirectionlist
inst/dependency_linux/mafft-linux64/mafftdir/libexec/mccaskillwrap
inst/dependency_linux/mafft-linux64/mafftdir/libexec/multi2hat3s
inst/dependency_linux/mafft-linux64/mafftdir/libexec/nodepair
inst/dependency_linux/mafft-linux64/mafftdir/libexec/pairash
inst/dependency_linux/mafft-linux64/mafftdir/libexec/pairlocalalign
inst/dependency_linux/mafft-linux64/mafftdir/libexec/regtable2seq
inst/dependency_linux/mafft-linux64/mafftdir/libexec/replaceu
inst/dependency_linux/mafft-linux64/mafftdir/libexec/restoreu
inst/dependency_linux/mafft-linux64/mafftdir/libexec/score
inst/dependency_linux/mafft-linux64/mafftdir/libexec/seekquencer_premafft.pl
inst/dependency_linux/mafft-linux64/mafftdir/libexec/seq2regtable
inst/dependency_linux/mafft-linux64/mafftdir/libexec/setcore
inst/dependency_linux/mafft-linux64/mafftdir/libexec/setdirection
inst/dependency_linux/mafft-linux64/mafftdir/libexec/sextet5
inst/dependency_linux/mafft-linux64/mafftdir/libexec/splittbfast
inst/dependency_linux/mafft-linux64/mafftdir/libexec/tbfast
inst/dependency_linux/mafft-linux64/mafftdir/libexec/version
inst/dependency_win/Blastn/RNAfold.exe
inst/dependency_win/Blastn/RNAplot.exe
inst/dependency_win/Blastn/blastn.exe
inst/dependency_win/Blastn/libgcc_s_seh-1.dll
inst/dependency_win/Blastn/libgmp-10.dll
inst/dependency_win/Blastn/libgmpxx-4.dll
inst/dependency_win/Blastn/libgomp-1.dll
inst/dependency_win/Blastn/libgsl-25.dll
inst/dependency_win/Blastn/libgslcblas-0.dll
inst/dependency_win/Blastn/libmpfr-6.dll
inst/dependency_win/Blastn/libssp-0.dll
inst/dependency_win/Blastn/libstdc++-6.dll
inst/dependency_win/Blastn/libwinpthread-1.dll
inst/dependency_win/Blastn/makeblastdb.exe
inst/dependency_win/Blastn/nghttp2.dll
inst/dependency_win/mafft-win/mafft-signed.ps1
inst/dependency_win/mafft-win/mafft-win
inst/dependency_win/mafft-win/mafft.bat
inst/dependency_win/mafft-win/usr/bin/awk.exe
inst/dependency_win/mafft-win/usr/bin/basename.exe
inst/dependency_win/mafft-win/usr/bin/bash.exe
inst/dependency_win/mafft-win/usr/bin/cat.exe
inst/dependency_win/mafft-win/usr/bin/chmod.exe
inst/dependency_win/mafft-win/usr/bin/comm.exe
inst/dependency_win/mafft-win/usr/bin/cp.exe
inst/dependency_win/mafft-win/usr/bin/cut.exe
inst/dependency_win/mafft-win/usr/bin/date.exe
inst/dependency_win/mafft-win/usr/bin/dirname.exe
inst/dependency_win/mafft-win/usr/bin/echo.exe
inst/dependency_win/mafft-win/usr/bin/env.exe
inst/dependency_win/mafft-win/usr/bin/expr.exe
inst/dependency_win/mafft-win/usr/bin/false.exe
inst/dependency_win/mafft-win/usr/bin/file.exe
inst/dependency_win/mafft-win/usr/bin/fold.exe
inst/dependency_win/mafft-win/usr/bin/grep.exe
inst/dependency_win/mafft-win/usr/bin/gzip.exe
inst/dependency_win/mafft-win/usr/bin/head.exe
inst/dependency_win/mafft-win/usr/bin/id.exe
inst/dependency_win/mafft-win/usr/bin/info.exe
inst/dependency_win/mafft-win/usr/bin/join.exe
inst/dependency_win/mafft-win/usr/bin/ln.exe
inst/dependency_win/mafft-win/usr/bin/ls.exe
inst/dependency_win/mafft-win/usr/bin/mafft
inst/dependency_win/mafft-win/usr/bin/mafft-homologs.rb
inst/dependency_win/mafft-win/usr/bin/md5sum.exe
inst/dependency_win/mafft-win/usr/bin/mkdir.exe
inst/dependency_win/mafft-win/usr/bin/mktemp.exe
inst/dependency_win/mafft-win/usr/bin/more.exe
inst/dependency_win/mafft-win/usr/bin/msys-2.0.dll
inst/dependency_win/mafft-win/usr/bin/msys-gcc_s-seh-1.dll
inst/dependency_win/mafft-win/usr/bin/msys-gmp-10.dll
inst/dependency_win/mafft-win/usr/bin/msys-iconv-2.dll
inst/dependency_win/mafft-win/usr/bin/msys-intl-8.dll
inst/dependency_win/mafft-win/usr/bin/msys-magic-1.dll
inst/dependency_win/mafft-win/usr/bin/msys-mpfr-4.dll
inst/dependency_win/mafft-win/usr/bin/msys-ncursesw6.dll
inst/dependency_win/mafft-win/usr/bin/msys-pcre-1.dll
inst/dependency_win/mafft-win/usr/bin/msys-readline6.dll
inst/dependency_win/mafft-win/usr/bin/msys-z.dll
inst/dependency_win/mafft-win/usr/bin/mv.exe
inst/dependency_win/mafft-win/usr/bin/od.exe
inst/dependency_win/mafft-win/usr/bin/paste.exe
inst/dependency_win/mafft-win/usr/bin/printf.exe
inst/dependency_win/mafft-win/usr/bin/ps.exe
inst/dependency_win/mafft-win/usr/bin/pwd.exe
inst/dependency_win/mafft-win/usr/bin/rm.exe
inst/dependency_win/mafft-win/usr/bin/rmdir.exe
inst/dependency_win/mafft-win/usr/bin/sed.exe
inst/dependency_win/mafft-win/usr/bin/sh.exe
inst/dependency_win/mafft-win/usr/bin/sleep.exe
inst/dependency_win/mafft-win/usr/bin/sort.exe
inst/dependency_win/mafft-win/usr/bin/split.exe
inst/dependency_win/mafft-win/usr/bin/stty.exe
inst/dependency_win/mafft-win/usr/bin/tail.exe
inst/dependency_win/mafft-win/usr/bin/tar.exe
inst/dependency_win/mafft-win/usr/bin/touch.exe
inst/dependency_win/mafft-win/usr/bin/tr.exe
inst/dependency_win/mafft-win/usr/bin/true.exe
inst/dependency_win/mafft-win/usr/bin/uname.exe
inst/dependency_win/mafft-win/usr/bin/uniq.exe
inst/dependency_win/mafft-win/usr/bin/wc.exe
inst/dependency_win/mafft-win/usr/bin/which.exe
inst/dependency_win/mafft-win/usr/bin/xargs.exe
inst/dependency_win/mafft-win/usr/lib/mafft/addsingle.exe
inst/dependency_win/mafft-win/usr/lib/mafft/contrafoldwrap.exe
inst/dependency_win/mafft-win/usr/lib/mafft/countlen.exe
inst/dependency_win/mafft-win/usr/lib/mafft/dash_client.exe
inst/dependency_win/mafft-win/usr/lib/mafft/disttbfast.exe
inst/dependency_win/mafft-win/usr/lib/mafft/dndblast.exe
inst/dependency_win/mafft-win/usr/lib/mafft/dndfast7.exe
inst/dependency_win/mafft-win/usr/lib/mafft/dndpre.exe
inst/dependency_win/mafft-win/usr/lib/mafft/dvtditr.exe
inst/dependency_win/mafft-win/usr/lib/mafft/f2cl.exe
inst/dependency_win/mafft-win/usr/lib/mafft/filter.exe
inst/dependency_win/mafft-win/usr/lib/mafft/getlag.exe
inst/dependency_win/mafft-win/usr/lib/mafft/hex2maffttext.exe
inst/dependency_win/mafft-win/usr/lib/mafft/mafft-distance.exe
inst/dependency_win/mafft-win/usr/lib/mafft/mafft-homologs.1
inst/dependency_win/mafft-win/usr/lib/mafft/mafft-profile.exe
inst/dependency_win/mafft-win/usr/lib/mafft/mafft.1
inst/dependency_win/mafft-win/usr/lib/mafft/mafftash_premafft.pl
inst/dependency_win/mafft-win/usr/lib/mafft/maffttext2hex.exe
inst/dependency_win/mafft-win/usr/lib/mafft/makedirectionlist.exe
inst/dependency_win/mafft-win/usr/lib/mafft/mccaskillwrap.exe
inst/dependency_win/mafft-win/usr/lib/mafft/multi2hat3s.exe
inst/dependency_win/mafft-win/usr/lib/mafft/nodepair.exe
inst/dependency_win/mafft-win/usr/lib/mafft/pairash.exe
inst/dependency_win/mafft-win/usr/lib/mafft/pairlocalalign.exe
inst/dependency_win/mafft-win/usr/lib/mafft/regtable2seq.exe
inst/dependency_win/mafft-win/usr/lib/mafft/replaceu.exe
inst/dependency_win/mafft-win/usr/lib/mafft/restoreu.exe
inst/dependency_win/mafft-win/usr/lib/mafft/score.exe
inst/dependency_win/mafft-win/usr/lib/mafft/seekquencer_premafft.pl
inst/dependency_win/mafft-win/usr/lib/mafft/seq2regtable.exe
inst/dependency_win/mafft-win/usr/lib/mafft/setcore.exe
inst/dependency_win/mafft-win/usr/lib/mafft/setdirection.exe
inst/dependency_win/mafft-win/usr/lib/mafft/sextet5.exe
inst/dependency_win/mafft-win/usr/lib/mafft/splittbfast.exe
inst/dependency_win/mafft-win/usr/lib/mafft/tbfast.exe
inst/dependency_win/mafft-win/usr/lib/mafft/version.exe
inst/dependency_win/mafft-win/usr/share/misc/magic
man/CaSilico.Rd
man/Rcompliment.Rd
man/VDotplot.Rd
man/compliment.Rd
man/mafftR.Rd
