mafftR: MAFFT (Multiple Sequence Alignment) in R
In mrb20045/CaSilico: In silico crRNA design for different CRISPR-Cas subtypes
mafftR R Documentation
MAFFT (Multiple Sequence Alignment) in R
Description
MAFFT (Multiple Sequence Alignment) in R
Usage
mafftR(TargetFasta, MafftOptions = "--auto --inputorder")
Arguments
TargetFasta
Full path to the target sequence(s); Example: TargetFasta="/usr/mrb/casilico/genome.fasta"
mafft_Options
Options to run mafft; Example: MafftOptions="–auto –inputorder"
Value
msa file (output of mafft), always output format is Clustal and name is final_fasta_file.aln
Further details
mafftR reports output as a cluster in final_fasta_file.aln file.
details for Options at https://mafft.cbrc.jp/alignment/software/manual/manual.html
mrb20045/CaSilico documentation built on Nov. 1, 2023, 10:34 a.m.
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| mafftR | R Documentation |
MAFFT (Multiple Sequence Alignment) in R
Description
MAFFT (Multiple Sequence Alignment) in R
Usage
mafftR(TargetFasta, MafftOptions = "--auto --inputorder")
Arguments
TargetFasta |
Full path to the target sequence(s); Example: TargetFasta="/usr/mrb/casilico/genome.fasta" |
mafft_Options |
Options to run mafft; Example: MafftOptions="–auto –inputorder" |
Value
msa file (output of mafft), always output format is Clustal and name is final_fasta_file.aln
Further details
mafftR reports output as a cluster in final_fasta_file.aln file. details for Options at https://mafft.cbrc.jp/alignment/software/manual/manual.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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